![]() J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Pena, Julia K Goodrich, Jeffrey I Gordon, Gavin A Huttley, Scott T Kelley, Dan Knights, Jeremy E Koenig, Ruth E Ley, Catherine A Lozupone, Daniel McDonald, Brian D Muegge, Meg Pirrung, Jens Reeder, Joel R Sevinsky, Peter J Turnbaugh, William A Walters, Jeremy Widmann, Tanya Yatsunenko, Jesse Zaneveld and Rob Knight Nature Methods, 2010 doi:10.1038/nmeth.f.303 QIIME allows analysis of high-throughput community sequencing data See here for information on how to contribute to QIIME. QIIME scripts: The QIIME script documentation will help you explore and learn QIIME's functionality. For getting started on interacting with the command line, we recommend the Software Carpentry lessons and workshops. ![]() In each of these tutorials you'll download a small data set and work through a series of commands that will introduce you to some of QIIME's commonly used features and analyses. The Illumina overview tutorial or the 454 overview tutorial are good first analyses to run. Running: Once you've installed QIIME, move on to the QIIME Tutorials. See the QIIME install documentation for details. ![]() Installing: The quickest way to get started using QIIME is with MacQIIME (if you're running Mac OS X), the QIIME VirtualBox or the QIIME Amazon EC2 image (if you're using Windows, Mac OS X, or Linux), or pip (if you're using Linux or Mac OS X). ![]()
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